Yonatan Hutabarat, Ph.D.
● Early Career Researcher

Yonatan Hutabarat

Biomechanics · Wearable Technology · Human Behavior · Digital Health

Bonn, Germany

I am an early-career researcher working at the intersection of biomechanics and motor neuroscience, aiming to advance our understanding of human movement from a neuromechanical perspective. I develop and apply experimental and computational methods to study movement in naturalistic settings using multimodal approaches, including gold-standard optical motion capture, wearable sensors, and musculoskeletal modeling. My long-term goal is to pioneer predictive models that not only explain healthy motor control but also forecast the onset of movement impairments, paving the way for personalized interventions and adaptive assistive technologies.

I have recently completed my four-year postdoctoral training at the Centre for AI and Neuroscience, University of Bonn under the guidance of Dominik Bach. Prior to this, I received my Doctor of Philosophy in Biomedical Engineering from Tohoku University in 2022, supervised by Mitsuhiro Hayashibe at the Neuro-robotics Lab. I received my Master of Science in Engineering and Technology in 2018 and Bachelor of Engineering in Engineering Physics in 2015, at SIIT Thammasat University and Universitas Gadjah Mada, respectively.

I am looking for opportunities to collaborate on research projects and contribute to the advancement of knowledge in the field of biomechanics and neuroscience and their practical and clinical applications. Please feel free to reach out if you are interested in working together!

Projects

Methodological & Scientific Contributions

Embodied human behavior in naturalistic immersive environment

UNIVERSITY OF BONN · 2022–2026

When confronted with lethal threats, animals often display rapid, species-specific defensive behaviors. In contrast, human-specific defensive behaviors remain largely unknown and are challenging to investigate, partly due to ethical constraints in studying real life threat scenarios. In this project, we established a synchronized freely moving virtual reality (fm-VR) and motion-tracking system where participants forage in naturalistic environments while evading biologically relevant lethal threats. Across multi-site experiments, we identify a dominant human escape sequence: initial head turn toward the threat, whole-body rotation in the same direction, escape initiation using ipsilateral foot first, followed by forward locomotion toward shelter. Because the immersive nature of our virtual environment may reduce awareness of physical surroundings, we developed a validated kinematic stopping-distance model to predict collision risk and optimize physical safety buffers from the nearest walls. Together with low psychological distress and minimal cybersickness, this framework enables safe and ecologically valid investigations of human behavior, shifting psychological research toward studying behavior as continuous, embodied action.

Qualisys Mocap HTC Vive Virtual Reality Python

Minimal hardware representation for out-of-lab gait assessment

TOHOKU UNIVERSITY · 2018–2022

Continuous, out-of-lab gait assessment requires minimal sensor hardware capable of capturing complex biomechanical dynamics across varying locomotion modes. Here, we established and benchmarked a lightweight wearable framework that utilizes as few as two foot/shoe-mounted IMUs to reliably extract rich features of gait events, spatio-temporal characteristics and their derivatives as gait indices across various walking conditions. Further, we demonstrated the extent to which such a framework can be utilized not only work walking gait but also naturalistic running gait in out-of-lab setting, as well as potential clinical application in assessing dual-task gait for older adults. Finally, we further extent the framework to include machine learning-based classification that can predict GRF from sparse sensor configuration as well as for classification of different gait phases using LSTM and TCN, respectively. Taken together, this project provides an end-to-end framework for continuous gait assessment in out-of-lab settings using minimal wearable hardware.

OptiTrack Mocap MetaMotion IMUs Delsys Trigno EMG LSTM / TCN MATLAB Python

Multilevel control of semi-active prosthetic knees

NECTEC & SIIT THAMMASAT · 2016–2018

Restoring natural locomotion in transfemoral amputees requires prosthetic control architectures capable of coordinating user intent with non-linear actuator dynamics. In this project, we propose a hierarchical control framework for a semi-active prosthetic knee driven by a magnetorheological (MR) damper. The architecture integrates a high-level intent recognizer to classify behavioral transitions, a mid-level feedforward neural network to generate continuous joint impedance and reference trajectories, and an adaptive low-level actuator controller. To overcome the non-linear hysteresis of MR fluid without explicit system dynamic models, the low-level controller employs model-free reinforcement Q-learning augmented with an exponential multi-horizon reward shaping function. Across variable walking speeds (2.4–5.4 km/h), this control structure achieves rapid convergence and sub-1% normalized root mean squared tracking error. This unified multilevel paradigm bridges biomechanical intent with adaptive, data-driven damping control for wearable bionic systems.

Reinforcement Learning Q-learning Control Systems Prosthetics MATLAB
Research Output

Publications & Preprints

Bibliometrics Synced with Google Scholar (5ZfyVL0AAAAJ)
319
Total Citations
Google Scholar Profile
6 / 6
h-index / i10-index
Citation indices
12
Publications
Journals, Conferences & Preprints
16+
Peer Review Venues
Nature Portfolio, Elsevier, IEEE
Curriculum Vitae Overview

Experience, Education, Awards & Services

Postdoctoral Researcher 08/2022 – 08/2026
Centre for AI and Neuroscience (caian), University of Bonn, Germany · PI: Dominik Bach
Research topic: Neuromechanics of human movement under threat.
Research Assistant & Doctoral Researcher 10/2018 – 03/2022
Neurorobotics Lab, Tohoku University, Japan · PI: Mitsuhiro Hayashibe
Research topic: Quantitative gait analysis using minimal wearable sensors.
Research Intern & Research Assistant 06–09/2016 & 01–06/2018
National Electronics and Computer Technology Center (NECTEC), Thailand · PI: Kittipong Ekkachai
Research topic: Reinforcement learning for prosthetic knee control and patent review in computer vision for biomedical applications.
Visiting Researcher 12/2016
Smart Mobility Lab, Keio University, Japan · PI: Manabu Omae
Research topic: Technology for automated driving control systems.
Doctor of Philosophy (Ph.D.) in Biomedical Engineering 10/2018 – 03/2022
Tohoku University, Japan
Dissertation: Multimodal quantitative gait assessment using minimal wearable sensors.
Master of Science (M.S.) in Engineering and Technology (GPA: 4.00/4.00) 01/2016 – 09/2018
Sirindhorn International Institute of Technology (SIIT), Thammasat University, Thailand
Thesis: Diverse studies within a multi-level controller framework of prosthetic knee.
Bachelor of Engineering (B.E.) in Engineering Physics (GPA: 3.55/4.00, Cum Laude) 08/2011 – 06/2015
Universitas Gadjah Mada, Indonesia
Thesis: Hammerstein system identification for control valve stiction detection.
MEXT Scholarship 2018
Ministry of Education, Culture, Sports, Science and Technology, Government of Japan
Full Ph.D. scholarship under the International Priority Graduate Program (PGP), Data Sciences Program (DSP) II. Total: ~JPY 7,000,000
National Research University (NRU) Research Grant & ECTI Travel Grant 2017
Thammasat University & ECTI Association, Thailand
Research project grant under the Centre of Excellence on Biomedical Engineering (SIIT) and travel award for SICE Annual Conference 2017 in Kanazawa, Japan. Total: THB 27,500.
Smart Mobility Project Travel Grant 2016
Keio University, Japan
Academic exchange grant to visit Smart Mobility Lab, Keio University. Total JPY 100,000.
Excellent Foreign Student (EFS) Scholarship 2015
SIIT, Thammasat University, Thailand
Full scholarship for pursuing the M.S. degree. Total: ~THB 480,000.
Leadership & Symposium Organization 2023 – 2025
PuG 2025 (Würzburg) & BIGS Neuroscience Summer School (University of Bonn)
Co-chaired topical symposium "Emerging Methodological Trends in Cognitive Neuroscience" (PuG 2025); organized lectures and hands-on VR + motion capture sessions for BIGS Neuroscience Summer School (University of Bonn 2023, 2024).
Teaching & Student Mentoring 2013 – 2026
University of Bonn · Tohoku University · SIIT · UGM
Lecturer & Tutor in Computational Neuroscience (Uni Bonn, 2025–2026); TA in Object-Oriented Programming, Feedback Control Lab., Basic Electrical Engineering (SIIT, 2016-2018); TA of Electronics Lab., Engineering Drawing (UGM, 2013-2015); supervised Master's and internship students on various topics: RL escape behavior, defensive hand roles, and deep learning GRF estimation.
Selected Talks & Presentations 2021 – 2026
FENS 2026 (Barcelona) · PuG 2025 (Würzburg)· ESMAC 2023 (Athens) · Rewire Lab., UT Austin 2022 · IEEE EMBC 2022 & 2021
Invited talk at UT Austin Rewire Lab; oral presentations at PuG 2025 and IEEE EMBC 2021 & 2022; poster presentations at FENS 2026 and ESMAC 2023.
Editorial & Peer Review Service Ongoing
Review Editor for Frontiers in Digital Health
Ad-hoc reviewer for Scientific Data, JNER, Expert Systems with Applications, BSPC, IEEE Sensors Journal, IEEE RA-L, CMBBE, Scientific Reports, Sensors, Biomimetics, Frontiers in Digital Health, Frontiers in Sports and Active Living, Frontiers in Virtual Reality, ICRA 2025, IROS 2021.

Experimental Hardware & Scientific Computing

Full-stack experimental setup design, hardware synchronization, musculoskeletal modeling, and ML/CV library.

Python (Primary) MATLAB R PyTorch Long Short-Term Memory (LSTM) Temporal Convolutional Networks (TCN) MoveNet Reinforcement Learning (Q-Learning) OpenSim OpenCap Qualisys & OptiTrack Mocap Delsys Trigno EMG MetaMotion IMUs AMTI Force Plates HTC Vive VR System Stridealyzer Instrumented Insoles